Question

The “collateral” activation of these proteins is the core of the SHERLOCK and HOLMES methods. The SpRY (10[1])(“spry”) variant of one of these proteins is significantly more (10[1])promiscuous because it lacks key arginines at positions 1333 and 1335. A tool co-developed by Dana-Farber and the Broad (“brohd”) for designing experiments with these proteins (10[1])is called MAGeCK (10[1])(“mah-GECK”). “Dead” examples (10[1])of these proteins have been deactivated by mutations in both the HNH (10[1])and RuvC domain. (10[3])One of these proteins from S. pyogenes (“pye-OJ-uh-neez”) has been engineered to be “near-PAMless,” (10[1])expanding its range but increasing the chance of off-target cleavage. (-5[1])One-vector systems package these proteins alongside the sgRNAs (-5[1])that (-5[1])encode their target sequences. (10[1])For 10 points, name these endonucleases that are (10[1])directed by guide RNAs (10[2])produced from CRISPR (“crisper”) sequences. (10[1])■END■ (10[6]0[2])

ANSWER: Cas nucleases [or CRISPR associated proteins; accept CRISPR/Cas9 or Cas12a or Cas13a; prompt on DNA endonucleases or RNA endonucleases until “endonucleases” is read; reject “CRISPR”] (MAGeCK designs GeCKo knockout libraries.)
<Biology>
= Average correct buzz position

Summary

2024 ACF Nationals2024-04-21Y2391%0%13%89.29

Buzzes

PlayerTeamOpponentBuzz PositionValue
Michal GerasimiukStanfordCornell A1610
Swapnil GargBerkeley ANorthwestern2510
Wenying WuToronto AMichigan5010
Amith PunyalaWUSTL BRutgers5310
Paul LeeWUSTL AChicago A5510
Rohan ShelkeBerkeley BChicago D6710
Aditya SharmaDukeClaremont Colleges7010
Bryan UgazArizona StateFlorida7010
Jason HongBrownMaryland7010
David BassJohns HopkinsYale A8310
Vishal KanigicherlaPennColumbia B93-5
Jeffrey FungHarvardCornell B101-5
Ben WeinerMinnesota APurdue102-5
Moses KitakuleColumbia AChicago B10610
Alex AkridgeIndianaWaterloo11410
Vincent DuNorth Carolina ATexas11810
Jason ZhangToronto BVirginia11810
Albert ZhangColumbia BPenn12210
Fred GarveyTruman StateChicago C12310
Sarod NoriCornell BHarvard12310
Jack ObermanSouth CarolinaKentucky1230
Conor ThompsonIowa StateGeorgia Tech12310
Andrew WangIllinoisNYU12310
Andrew KelleyKentuckySouth Carolina1230
Ivvone ZhouNorth Carolina BVanderbilt12310
Lydia TarekegnYale BOttawa12310